Complexome Remodelling in Mitochondrial Disease

Mitochondriën spelen, als de energiecentrales van de cel, een centrale role in ziekte en gezondheid. Mutaties in de meer dan 1200 genen die de mitochondriën besturen leiden tot het dysfunctioren van de cel en veroorzaken mitochondriële ziekten. Hoewel deze mutaties allemaal leiden tot een verstoring van de energiehuishouding, is er een grote variatie in het ziekteverloop tussen patiënten. Bovendien worden niet alle organen in dezelfde mate aangetast. Blijkbaar kunnen sommige patiënten of organen zich beter aanpassen aan de mutaties. Ons onderzoek richt zich op het begrijpen van de moleculaire mechanismen die aan deze variatie ten grondslag liggen. Wij richten ons daarbij op de eiwitten en eiwit complexen binnen de mitochondriën. We ontwikkelen de technieken om te bepalen hoe de variaties in de aanwezigheid van eiwitten en in hun interacties correleren met de ernst van de ziekte. Met die kennis kunnen we beter ingrijpen in de cel om mitochondriele ziektes te genezen.

Producten

Titel: Investigation of central energy metabolism-related protein complexes of ANME-2d methanotrophic archaea by complexome profiling
Auteur: Stefanie Berger, Alfredo Cabrera-Orefice, Mike S.M.Jetten, Ulrich Brandt, Cornelia U.Welte
Magazine: BBA Biomembranes
Begin- en eindpagina: 1-18
Link: https://www.sciencedirect.com/science/article/pii/S0005272820301584?via%3Dihub
Titel: CG7630 is the Drosophila melanogaster homolog of the cytochrome c oxidase subunit COX7B
Auteur: Michele Brischigliaro, Alfredo Cabrera-Orefice, Mattia Sturlese, Dei M Elurbe, Elena Frigo, Erika Fernandez-Vizarra, Stefano Moro, Martijn A Huynen, Susanne Arnold, Carlo Viscomi, Massimo Zeviani
Magazine: EMBO rep.
Begin- en eindpagina: 54825-54825
Link: https://www.embopress.org/doi/full/10.15252/embr.202254825
Titel: Composition and stage dynamics of mitochondrialcomplexes inPlasmodium falciparum
Auteur: ARTICLEComposition and stage dynamics of mitochondrialcomplexes inPlasmodium falciparumFelix Evers1, Alfredo Cabrera-Orefice2,3, Dei M. Elurbe3, Mariska Kea-te Lindert4,5, Sylwia D. Boltryk6,7,Till S. Voss6,7, Martijn A. Huynen3, Ulrich Brandt2,8& Taco W. A. Kooij1?
Magazine: Nature Communications
Begin- en eindpagina: 1-17
Link: https://www.nature.com/articles/s41467-021-23919-x
Titel: Mitochondrial complex complexification
Auteur: Martijn Huynen, Dei Elurbe
Magazine: Science
Begin- en eindpagina: 794-795
Link: https://www.science.org/doi/10.1126/science.abq0368?url_ver=Z39.88-2003&rfr_id=ori:rid:crossref.org&rfr_dat=cr_pub%20%200pubmed
Titel: COmplexome Profiling ALignment (COPAL) reveals remodeling of mitochondrial protein complexes in Barth syndrome
Auteur: Joeri Van Strien, Sergio Guerrero-Castillo, Iliana A Chatzispyrou, Riekelt H Houtkooper, Ulrich Brandt, Martijn A Huynen
Magazine: Bioinformatics
Begin- en eindpagina: 3083-3091
Link: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6735710/
Titel: Composition and stage dynamics of mitochondrial complexes in Plasmodium falciparum
Auteur: Felix Evers, Alfredo Cabrera-Orefice, Dei M. Elurbe, Mariska Kea-te Lindert, Sylwia D. Boltryk, Till S. Voss, Martijn A. Huynen, Ulrich Brandt & Taco W. A. Kooij
Magazine: Nature Communications
Begin- en eindpagina: 3820-3820
Link: https://www.nature.com/articles/s41467-021-23919-x
Titel: AIFM1 is a component of the mitochondrial disulfide relay that drives complex I assembly through efficient import of NDUFS5
Auteur: Silja Lucia Salscheider # 1 , Sarah Gerlich # 1 , Alfredo Cabrera-Orefice # 2 , Esra Peker 1 , Robin Alexander Rothemann 1 , Lena Maria Murschall 1 , Yannik Finger 1 , Karolina Szczepanowska 3 4 , Zeinab Alsadat Ahmadi 2 , Sergio Guerrero-Castillo 2 , Alican Erdogan 1 , Mark Becker 1 , Muna Ali 1 , Markus Habich 1 , Carmelina Petrungaro 1 , Nele Burdina 1 , Guenter Schwarz 1 4 5 , Merlin Klußmann 1 , Ines Neundorf 1 , David A Stroud 6 , Michael T Ryan 6 , Aleksandra
Magazine: EMBO Journal
Begin- en eindpagina: 11078-11078
Titel: A Prioritized and Validated Resource of Mitochondrial Proteins in Plasmodium Identifies Unique Biology
Auteur: Selma L van Esveld 1 2 , Lisette Meerstein-Kessel # 1 3 , Cas Boshoven # 4 , Jochem F Baaij 1 , Konstantin Barylyuk 5 , Jordy P M Coolen 4 , Joeri van Strien 1 , Ronald A J Duim 1 , Bas E Dutilh 1 6 , Daniel R Garza 1 7 , Marijn Letterie 4 , Nicholas I Proellochs 4 , Michelle N de Ridder 4 , Prashanna Balaji Venkatasubramanian 1 , Laura E de Vries 4 , Ross F Waller 5 , Taco W A Kooij 4 , Martijn A Huynen 1 2
Magazine: mSphere
Begin- en eindpagina: 614-621
Link: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8550323/
Titel: A Prioritized and Validated Resource of Mitochondrial Proteins in Plasmodium Identifies Unique Biology
Auteur: Selma L van Esveld, Lisette Meerstein-Kessel, Cas Boshoven, Jochem F Baaij, Konstantin Barylyuk, Jordy P M Coolen, Joeri van Strien , Ronald A J Duim, Bas E Dutilh, Daniel R Garza, Marijn Letterie, Nicholas I Proellochs , Michelle N de Ridder, Prashanna Balaji Venkatasubramanian, Laura E de Vries, Ross F Waller, Taco W A Kooij, Martijn A Huynen
Magazine: mSphere
Begin- en eindpagina: 614-621
Link: https://journals.asm.org/doi/10.1128/msphere.00614-21?url_ver=Z39.88-2003&rfr_id=ori%3Arid%3Acrossref.org&rfr_dat=cr_pub++0pubmed
Titel: Selective cross-linking of coinciding protein assemblies by in-gel cross-linking mass spectrometry
Auteur: Hevler, J.F., Lukassen, M.V., Cabrera-Orefice, A., Arnold, S, Pronker, M.F., Franc, V.a,b, Heck, A.J.R.
Magazine: EMBO Journal
Begin- en eindpagina: 1-2
Link: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7883291/
Titel: C)mplexome Profiling ALignment (COPAL) reveals remodeling of mitochondrial protein complexes in Barth syndrome
Auteur: Van Strien J, Guerrero-Castillo S, Chatzispyrou IA, Houtkooper RH, Brandt U, Huynen MA
Magazine: Bioinformatics
Begin- en eindpagina: 3083-3091
Link: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6735710/
Titel: Uncharacterized protein C17orf80 – a novel interactor of human mitochondrial nucleoids
Auteur: Alisa Potter, Anu Hangas, Steffi Goffart , Martijn A. Huynen, Alfredo Cabrera-Orefice, Johannes N. Spelbrink
Magazine: Journal of Cell Science
Begin- en eindpagina: 260822-260822
Link: https://journals.biologists.com/jcs/article/136/15/jcs260822/324980/Uncharacterized-protein-C17orf80-a-novel
Titel: CG7630 is the Drosophila melanogaster homolog of the cytochrome c oxidase subunit COX7B
Auteur: Michele Brischigliaro 1 , Alfredo Cabrera-Orefice 2 , Mattia Sturlese 3 , Dei M Elurbe 4 , Elena Frigo 1 , Erika Fernandez-Vizarra 1 5 , Stefano Moro 3 , Martijn A Huynen 4 , Susanne Arnold 2 6 , Carlo Viscomi 1 , Massimo Zeviani 5 7
Magazine: EMBO Reports
Begin- en eindpagina: 5482-5482
Titel: Complexome Profiling—Exploring Mitochondrial Protein Complexes in Health and Disease
Auteur: Alfredo Cabrera-Orefice, Alisa Potter, Felix Evers, Johannes F Hevler, Sergio Guerrero-Castillo
Magazine: Front Cell Dev Biol
Begin- en eindpagina: 796128-796128
Link: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8790184/
Titel: Complexome Profiling-Exploring Mitochondrial Protein Complexes in Health and Disease
Auteur: Alfredo Cabrera-Orefice 1 , Alisa Potter 2 , Felix Evers 3 , Johannes F Hevler 4 5 6 7 , Sergio Guerrero-Castillo 8
Magazine: Frontiers in Cell and Developmental biology
Begin- en eindpagina: 1-26
Link: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8790184/pdf/fcell-09-796128.pdf
Titel: Comparative Clustering (CompaCt) of eukaryote complexomes identifies novel interactions and sheds light on protein complex evolution
Auteur: Joeri van Strien, Felix Evers , Madhurya Lutikurti, Stijn L Berendsen , Alejandro Garanto, Geert-Jan van Gemert , Alfredo Cabrera-Orefice , Richard J Rodenburg, Ulrich Brandt, Taco W A Kooij, Martijn A Huynen
Magazine: Plos Computational Biology
Begin- en eindpagina: 1011090-1011090
Link: https://www.zonmw.nl
Titel: Investigation of central energy metabolism-related protein complexes of ANME-2d methanotrophic archaea by complexome profiling
Auteur: Stefanie Berger, Alfredo Cabrera-Orefice, Mike S.M. Jette, Ulrich Brandt, Cornelia U. Welte
Magazine: Biochimica et Biophysica Acta (BBA) - Bioenergetics
Begin- en eindpagina: 148308-148308
Link: https://www.sciencedirect.com/science/article/pii/S0005272820301584
Titel: CEDAR, an online resource for the reporting and exploration of complexome profiling data
Auteur: Joeri van Strien, Alexander Haupt, Uwe Schulte, Hans-Peter Braun, Alfredo Cabrera-Orefice, Jyoti S Choudhary, Felix Evers, Erika Fernandez-Vizarra, Sergio Guerrero-Castillo, Taco W A Kooij, Petra Páleníková, Mercedes Pardo, Cristina Ugalde, Ilka Wittig , Lars Wöhlbrand, Ulrich Brandt, Susanne Arnold, Martijn A Huynen
Magazine: Biochim Biophys Acta Bioenerg
Begin- en eindpagina: 148411-148411
Link: https://www.sciencedirect.com/science/article/pii/S000527282100044X?via%3Dihub
Titel: TMEM70 functions in the assembly of complexes I and V
Auteur: Laura Sánchez-Caballero, Dei M Elurbe, Fabian Baertling, Sergio Guerrero-Castillo, Mariel van den Brand, Joeri van Strien, Teunis J P van Dam, Richard Rodenburg, Ulrich Brandt, Martijn A Huynen, Leo G J Nijtmans
Magazine: BBA Biomembranes
Begin- en eindpagina: 1861-1868
Link: https://www.sciencedirect.com/science/article/pii/S0005272820300529?via%3Dihub
Titel: Ablation of mitochondrial DNA results in widespread remodeling of the mitochondrial complexome
Auteur: Sergio Guerrero-Castillo 1 2 , Joeri van Strien 1 3 , Ulrich Brandt 1 4 , Susanne Arnold
Magazine: EMBO Journal
Begin- en eindpagina: 1-19
Link: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8561636/
Titel: The cytochrome b carboxyl terminal region is necessary for mitochondrial complex III assembly
Auteur: Daniel Flores-Mireles, View ORCID ProfileYolanda Camacho-Villasana, Madhurya Lutikurti, Aldo E García-Guerrero, Guadalupe Lozano-Rosas, Victoria Chagoya, Emma Berta Gutiérrez-Cirlos, Ulrich Brandt, Alfredo Cabrera-Orefice, Xochitl Pérez-Martínez
Magazine: Life Science Alliance
Begin- en eindpagina: 202201858-202201858
Link: https://www.life-science-alliance.org/content/6/7/e202201858
Titel: MRPS36 provides a structural link in the eukaryotic 2-oxoglutarate dehydrogenase complex
Auteur: Johannes F Hevler, Pascal Albanese, Alfredo Cabrera-Orefice, Alisa Potter, Andris Jankevics, Jelena Misic, Richard A Scheltema, Ulrich Brandt, Susanne Arnold, Albert J R Heck
Magazine: Open Biol
Begin- en eindpagina: 220363-220363
Link: https://royalsocietypublishing.org/doi/10.1098/rsob.220363?url_ver=Z39.88-2003&rfr_id=ori%3Arid%3Acrossref.org&rfr_dat=cr_pub++0pubmed
Titel: TMEM70 functions in the assembly of complexes I and V
Auteur: Sánchez-Caballero L, Elurbe DM, Baertling F, Guerrero-Castillo S, van den Brand M, van Strien J, van Dam TJP, Rodenburg R, Brandt U, Huynen MA, Nijtmans LGJ
Magazine: Biochim Biophys Acta Bioenerg
Begin- en eindpagina: 148202-148202
Link: https://www.sciencedirect.com/science/article/pii/S0005272820300529?via%3Dihub
Titel: AIFM1 is a component of the mitochondrial disulfide relay that drives complex I assembly through efficient import of NDUFS5
Auteur: Silja Lucia Salscheider, Sarah Gerlich, Alfredo Cabrera-Orefice, Esra Peker, Robin Alexander Rothemann, Lena Maria Murschall, Yannik Finger, Karolina Szczepanowska, Zeinab Alsadat Ahmadi, Sergio Guerrero-Castillo, Alican Erdogan, Mark Becker, Muna Ali, Markus Habich, Carmelina Petrungaro, Nele Burdina, Guenter Schwarz, Merlin Klußmann, Ines Neundorf
Magazine: EMBO journal
Begin- en eindpagina: 110784-110784
Link: https://www.embopress.org/doi/full/10.15252/embj.2022110784
Titel: Mitochondrial complex complexification
Auteur: M A. Huynen and D. Elurbe
Magazine: Science
Begin- en eindpagina: 794-795
Titel: MRPS36 provides a missing link in the eukaryotic 2-oxoglutarate dehydrogenase complex for recruitment of E3 to the E2 core
Auteur: Johannes f Hevler, Pascal Albanese, Alfredo Cabrera-Orefice, Alisa Potter, Andris Jankevics, Jelena Misic, Richard A Scheltema, Ulrich Brandt, Susanne Arnold, Albert J.R. Heck
Magazine: BioRxiv
Begin- en eindpagina: 1-1
Link: https://www.biorxiv.org/content/10.1101/2022.10.08.511390v1
Titel: CEDAR, an online resource for the reporting and exploration of complexome profiling data
Auteur: Joeri van Strien 1 , Alexander Haupt 2 , Uwe Schulte 3 , Hans-Peter Braun 4 , Alfredo Cabrera-Orefice 1 , Jyoti S Choudhary 5 , Felix Evers 6 , Erika Fernandez-Vizarra 7 , Sergio Guerrero-Castillo 8 , Taco W A Kooij 6 , Petra Páleníková 7 , Mercedes Pardo 5 , Cristina Ugalde 9 , Ilka Wittig 10 , Lars Wöhlbrand 11 , Ulrich Brandt 12 , Susanne Arnold 12 , Martijn A Huynen
Magazine: Biochimica et Biophysica Acta
Begin- en eindpagina: 14841-14841
Link: https://doi.org/10.1016/j.bbabio.2021.148411
Titel: Molecular characterization of a complex of apoptosis-inducing factor 1 with cytochrome c oxidase of the mitochondrial respiratory chain
Auteur: Johannes F Hevler 1 2 , Riccardo Zenezeni Chiozzi 1 2 , Alfredo Cabrera-Orefice 3 , Ulrich Brandt 3 4 , Susanne Arnold 5 4 , Albert J R Heck 6 2
Magazine: Proceedings of the National Academy of Sciences USA
Begin- en eindpagina: 21069-21069
Link: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8488679/
Titel: Molecular characterization of a complex of apoptosis-inducing factor 1 with cytochrome c oxidase of the mitochondrial respiratory chain
Auteur: Johannes F. Hevler, Riccardo Zenezeni Chiozzi, Alfredo Cabrera-Orefice, Ulrich Brandt, Susanne Arnold, Albert J. R. Heck
Magazine: Proc. National Acad. Sci. USA
Begin- en eindpagina: 2106950118-2106950118
Link: https://www.pnas.org/doi/abs/10.1073/pnas.2106950118?url_ver=Z39.88-2003&rfr_id=ori:rid:crossref.org&rfr_dat=cr_pub%20%200pubmed
Titel: Ablation of mitochondrial DNA results in widespread remodeling of the mitochondrial complexome
Auteur: Sergio Guerrero-Castillo, Joeri van Strien, Ulrich Brandt, Susanne Arnold
Magazine: EMBO journal
Begin- en eindpagina: 108648-108648
Link: https://www.embopress.org/doi/full/10.15252/embj.2021108648
Titel: Let's make it clear: systematic exploration of mitochondrial DNA- and RNA-protein complexes by complexome profiling
Auteur: Alisa Potter, Alfredo Cabrera-Orefice, Johannes N Spelbrink
Magazine: Nucleic Acids Res.
Begin- en eindpagina: 10619-10641
Link: https://academic.oup.com/nar/article/51/19/10619/7249929?login=true
Titel: Computational exploration and analysis of complexome profiles
Auteur: Joeri van Strien

Kenmerken

Projectnummer:
91217009
Looptijd: 100%
2018
2023
Gerelateerde programma's:
Gerelateerde subsidieronde:
Projectleider en penvoerder:
prof. dr. M.A. Huynen
Verantwoordelijke organisatie:
Radboudumc