Microbiota Intervention Strategies Limiting Selection and Transmission of Antibiotic Resistance burden in the One Health domain (MISTAR)

Antimicrobial resistance (AMR) is becoming an increasingly serious problem worldwide. Yet it does not always receive sufficient attention. As a result, future generations run the risk of vital medicines becoming less effective. A major cause of AMR is the overuse of antibiotics. This makes it easier for resistant bacteria and resistance genes to develop and spread amongst humans, animals and the environment.

Aim

MISTAR investigated new ways to reduce the spread of AMR using a One Health approach that connects human, animal and environmental health.

Results

The project showed that microbiome-based interventions, including fecal microbiota transplantation (FMT), can be safely applied and may help control resistant bacteria in the gut. Large clinical studies identified microbiome and resistance-gene patterns that could support future AMR surveillance and more personalised treatment strategies. 

MISTAR also studied airborne transmission of resistance through dust. While household air purifiers showed limited effects, environmental interventions at livestock farms significantly reduced airborne resistance gene emissions. In addition, the project identified naturally occurring gut bacteria, bacteriophages and CRISPR-Cas technologies that can selectively target resistant bacteria and resistance genes. These findings provide promising new tools to prevent, monitor and combat AMR in healthcare, agriculture and the environment.

Products

Title: Antimicrobial Resistance in the Global Health Network: Known Unknowns and Challenges for Efficient Responses in the 21st Century.
Magazine: Microorganisms
Title: A novel resistance reversion mechanism in a vancomycin-variable Enterococcus faecium strain
Magazine: BioRxiv
Title: Screening of global microbiomes implies ecological boundaries impacting the distribution and dissemination of clinically relevant antimicrobial resistance genes
Magazine: Commun Biol
Title: Natural detoxification of antibiotics in the environment: A one health perspective.
Magazine: Frontiers in microbiology
Title: Phylogenomics of Globally Spread Clonal Groups 14 and 15 of Klebsiella pneumoniae.
Magazine: Microbiol Spectrum
Title: Ecology of the respiratory tract microbiome
Magazine: Trends in Microbiology
Title: Interspecific competition can drive the loss of conjugative plasmids from a focal species in a microbial community
Magazine: BioRxiv
Title: Removal of AMR plasmids using a mobile, broad host-range CRISPR-Cas9 delivery tool
Magazine: Microbiology
Title: The interplay of respiratory tract microbiome ecology, pathogen load, and clinical interventions define Legionella-associated pneumonia outcomes
Author: Pérez-Cobas AE, Ginevra C, Rusniok C, Jarraud S, Buchrieser C
Title: Selection and transmission patterns of enterococci in high-risk hospital areas.
Author: Pérez-Martín L, Aracil-Gisbert S, Guerra-Pinto N, Fernández-De-Bobadilla MD, Pérez- Cobas A, Soriano-Cuesta C, De Pablo R, Cantón R, Baquero F, Coque TM
Title: Dynamics of Klebsiella species in a high-risk hospital ward: the role of the built environment in the transmission and persistence of clones and multidrug resistant plasmids (Abstract number: 02064)
Author: Guerra-Pinto N, Aracil-Gisbert S, Fernández-De-Bobadilla MD, Lanza VF, Cantón R, Soriano C, Narváez G, Quinteros-Fiel V, López-Olivencia M, De Pablo R, Baquero F, Coque TM
Title: Ecology of hospital sinks inter-kingdom microbiome and its role as antimicrobial resistance reservoirs
Author: Pérez-Cobas AE, Guerra-Pinto N, Amaro F, Aracil-Gisbert S, Serrano S, Soriano C, de Pablo R, Baquero F, Coque T
Title: Long-term dynamics of the Intensive Care Unit “ward resistome and microbiome” using pooled fecal patient samples
Author: Aracil-Gisbert S, Fernández-De-Bobadilla MD, Pérez-Cobas AE, Soriano-Cuesta C, López-Olivencia M, Narváez G, Quinteros-Fiel V, Guerra-Pinto N, Lanza VF, Cantón R, De Pablo R, Baquero F, Coque TM
Title: Tomorrow’s Biology: Microbiome-based therapies : what can really be trusted?
Author: Pérez-Cobas AE

Features

Project number:
10570132110003
Duration: 100%
2022
2026
Part of programme:
Related funding round:
Project lead and secretary:
dr. M.R. de Zoete
Responsible organisation:
Universitair Medisch Centrum Utrecht