An automated system for high-throughput microarray sample preparation and hybridisation

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Titel: Amygdala 14-3-3ζ as a Novel Modulator of Escalating Alcohol Intake in Mice
Auteur: Lesscher HM, Houthuijzen JM, Groot Koerkamp MJ, Holstege FC, Vanderschuren LJ
Magazine: PLoS ONE
Titel: Identification of genes targeted by FSH and oocytes in porcine granulosa cells
Auteur: Verbraak EJ, van 't Veld EM, Koerkamp MG, Roelen BA, Haeften TV, Stoorvogel W, Zijlstra C
Magazine: Theriogenology
Titel: Functional organization of the S. cerevisiae phosphorylation network.
Auteur: Fiedler D, Braberg H, Mehta M, Chechik G, Cagney G, Mukherjee P, Silva AC, Shales M, Collins SR, van Wageningen S, Kemmeren P, Holstege FC, Weissman JS, Keogh MC, Koller D, Shokat KM, Krogan NJ
Magazine: Cell
Titel: Tight cooperation between Mot1p and NC2b in regulating genome-wide transcription, shut down of transcription following heat shock, and interaction with SAGA
Auteur: Spedale G, Meddens CA, Koster MJE, Ko CW, Hooff SR van, Holstege FCP, Timmers HThM, Pijnappel WWM
Magazine: Nucleic Acids Research
Titel: Structure-system correlation identifies a gene regulatory Mediator submodule.
Auteur: Larivière L, Seizl M, van Wageningen S, Röther S, van de Pasch L, Feldmann H, Strässer K, Hahn S, Holstege FC, Cramer P
Magazine: Genes and Development
Titel: Distinct role of Mediator tail module in regulation of SAGA-dependent, TATA-containing genes in yeast
Auteur: Ansari SA, Ganapathi M, Benschop JJ, Holstege FCP, Wade JT, Morse RH
Magazine: EMBO Journal
Titel: Redox-sensitive cysteines bridge p300/CBP-mediated acetylation and FoxO4 activity.
Auteur: Tobias B. Dansen, Lydia M.M. Smits, Miranda H. van Triest, Peter L.J. de Keizer, Dik van Leenen, Marian Groot Koerkamp, Anna Szypowska, Amanda Meppelink, Arjan B. Brenkman, Junji Yodoi, Frank C.P. Holstege, Boudewijn M.T. Burgering
Magazine: Nature Chemical Biology
Titel: Gene expression profiles of progestin-induced canine mammary hyperplasia and spontaneous mammary tumors.
Auteur: Rao NA, van Wolferen ME, Gracanin A, Bhatti SF, Krol M, Holstege FC, Mol JA
Magazine: Journal of Physiology and Pharmacology
Titel: Mouse hepatitis coronavirus replication induces host translational shutoff and mRNA decay, with concomitant formation of stress granules and processing bodies
Auteur: Raaben M, Koerkamp MJ, Rottier PJ, de Haan CA
Magazine: Cellular Microbiology
Titel: A consensus of core protein complex compositions for Saccharomyces cerevisiae.
Auteur: Benschop JJ, Brabers N, van Leenen D, Bakker LV, van Deutekom HW, van Berkum NL, Apweiler E, Lijnzaad P, Holstege FC, Kemmeren P
Magazine: Molecular Cell
Titel: cDNA microarray profiles of canine mammary tumour cell lines reveal deregulated pathways pertaining to their phenotype.
Auteur: Rao NA, van Wolferen ME, van den Ham R, van Leenen D, Groot Koerkamp MJ, Holstege FC, Mol JA
Magazine: Animal Genetics
Titel: Possible role of the innate immunity in temporal lobe epilepsy
Auteur: Koen L.I. van Gassen, Marina de Wit, Marian J.A. Grootkoerkamp, Marije G.A. Rensen, Peter C. van Rijen, Frank C.P. Holstege, Dick Lindhout and Pierre N.E. de Graan
Magazine: Epilepsia
Titel: H2B ubiquitylation controls the formation of export-competent mRNP
Auteur: Vitaliano-Prunier A, Babour A, Hérissant L, Apponi L, Margaritis T, Holstege FCP, Corbett AH, Gwizdek C, Dargemont C
Magazine: Molecular Cell
Titel: Cellular host transcriptional responses to Influenza A virus in chicken tracheal organ cultures differ from responses in in vivo infected trachea.
Auteur: S. Reemers, M. Groot Koerkamp, F. Holstege, W. van Eden, L. Vervelde
Magazine: Veterinary Immunology and Immunopathology
Titel: Differential gene expression and host response profiles against avian influenza virus within the chicken lung due to anatomy and airflow.
Auteur: Reemers SS, Van Haarlem DA, Groot Koerkamp MJ, Vervelde L
Magazine: Journal of General Virology
Titel: Epistatic relationships reveal the functional organization of yeast transcription factors.
Auteur: Zheng J, Benschop JJ, Shales M, Kemmeren P, Greenblatt J, Cagney G, Holstege F.C.P, Li H, Krogan NJ
Magazine: Molecular Systems Biology
Titel: Critical roles for a genetic code alteration in the evolution of the genus Candida
Auteur: Raquel M. Silva, João A. Paredes, Gabriela R. Moura, Bruno Manadas, Tatiana Lima-Costa, Rita Rocha, Isabel Miranda, Ana C. Gomes, Marian J. Groot Koerkamp, Michel Perrot, Frank C.P. Holstege, Hélian Boucherie and Manuel A.S. Santos
Magazine: The EMBO Journal
Titel: Modulation of glutamine metabolism by the PI3K-PKB/c-akt-FOXO network regulates autophagy
Auteur: Vos KE van der, Eliasson P, Proikas-Cezanne T, Vervoort S, Boxtel R van, Putker M, Zutphen IJ van, Mauthe M, Zellmer S, Pals C, Verhagen L, Groot Koerkamp MJ, Braat K, Dansen TB, Holstege FCP, Gebhardt R, Burgering BMT, Coffer PJ
Magazine: Nature Cell Biology
Titel: Tight control of MEK-ERK activation is essential in regulating proliferation, survival and cytokine production of CD34+ derived neutrophil progenitors.
Auteur: Geest CR, Buitenhuis M, Groot Koerkamp MJ, Holstege FC, Vellenga E, Coffer PJ
Magazine: Blood
Titel: Gcn4 misregulation reveals a direct role for the evolutionary conserved EKC/KEOPS in the t6A modification of tRNAs
Auteur: Daugeron MC, Lenstra TL, Frizzarin M, El Yacoubi B, Liu X, Baudin-Baillieu A, Lijnzaad P, Decourty L, Saveanu C, Jacquier A, Holstege FC, de Crécy-Lagard V, van Tilbeurgh H, Libri D
Magazine: Molecular Cell
Titel: Improved microarray gene expression profiling of virus-infected cells after removal of viral RNA.
Auteur: Raaben M, Whitley P, Bouwmeester D, Setterquist RA, Rottier PJ, de Haan CA
Magazine: BMC Genomics
Titel: C. elegans Cyclin D/Cdk4 and Cyclin E/Cdk2 induce distinct cell-cycle programs in differentiated muscle cells
Auteur: Korzelius J, The I, Ruijtenberg S, Portegijs V, Middelkoop T, Groot Koerkamp MJ, Holstege FCP, Boxem M, Heuvel S van den
Magazine: PLoS Genetics
Titel: Reduced immune reaction prevents immunopathology after challenge with avian influenza virus: A transcriptomics analysis of adjuvanted vaccines.
Auteur: Reemers SS, Jansen C, Koerkamp MJ, van Haarlem D, van de Haar P, Degen WG, van Eden W, Vervelde L
Magazine: Vaccine
Titel: The discrepancy between chromatin factor location and effect
Auteur: Lenstra TL, Holstege FC
Magazine: Nucleus
Titel: Gene expression profiling of liver cells after copper overload in vivo and in vitro reveals new copper-regulated genes
Auteur: Muller P, van Bakel H, van de Sluis B, Holstege F, Wijmenga C, Klomp LW
Magazine: Journal of Biological Inorganic Chemistry
Titel: A Barcode Screen For Epigenetic Regulators Reveals A Role For The NuB4/HAT-B Histone Acetyltransferase Complex In Histone Turnover
Auteur: Verzijlbergen K, Welsem T van, Sie D, Lenstra, T, Turner D, Holstege F, Kerkhoven R, Leeuwen F van
Magazine: PLoS Genetics
Titel: Functional overlap and regulatory links shape genetic interactions between signaling pathways.
Auteur: Wageningen S van, Kemmeren P, Lijnzaad P, Margaritis T, Benschop JJ, Castro IJ de, Leenen D van, Groot Koerkamp MJ, Ko C, Miles AJ, Brabers NAC, Brok MO, Lenstra TL, Fiedler D, Fokkens L, Aldecoa R, Apweiler E, Taliadouros V, Sameith K, Pasch LAL van de, Hooff SR van, Bakker LV, Krogan NJ, Snel B, Holstege FCP
Magazine: Cell
Titel: The specificity and topology of chromatin interaction pathways in yeast
Auteur: Lenstra TL, Benschop JJ, Kim T, Schulze JM, Brabers NACH, Margaritis T, Pasch LAL van de, Heesch SA van, Brok MO, Groot Koerkamp MJ, Ko CW, Leenen D van, Sameith K, Hooff SR van, Lijnzaad P, Kemmeren P, Hentrich T, Kobor MS, Buratowski S, Holstege FCP
Magazine: Molecular Cell
Titel: Dot1 binding induces chromatin rearrangements by histone methylation-dependent and -independent mechanisms
Auteur: Stulemeijer IJ, Pike BL, Faber AW, Verzijlbergen KF, van Welsem T, Frederiks F, Lenstra TL, Holstege FC, Gasser SM, Leeuwen F van
Magazine: Epigenetics and Chromatin
Titel: Cooperative action of NC2 and Mot1p to regulate TATA-binding protein function across the genome.
Auteur: Folkert J. van Werven, Harm van Bakel, Hetty A.A.M. van Teeffelen, Maarten A.F. Altelaar, Marian J.A. Groot Koerkamp, Albert J.R. Heck, Frank C.P. Holstege, Marc Th.M. Timmers
Magazine: Genes and Development
Titel: Retinoic acid-dependent and -independent gene-regulatory pathways of Pitx3 in meso-diencephalic dopaminergic neurons
Auteur: Jacobs FMJ, Veenvliet JV, Almirza WH, Hoekstra E, Oerthel L von, Linden AJA van der, Neijts R, Groot Koerkamp M, Leenen D van, Holstege F, Burbach JPH, Smidt MP
Magazine: Development
Titel: Early host responses to avian influenza A virus are prolonged and enhanced at transcriptional level depending on maturation of the immune system.
Auteur: Reemers SS, van Leenen D, Koerkamp MJ, van Haarlem D, van de Haar P, van Eden W, Vervelde L
Magazine: Molecular Immunology
Titel: High resolution genetic mapping of mammalian motor activity levels in mice.
Auteur: Berend Olivier, Hugo Oppelaar, Judith Hendriks, Marina de Wit, Marjan Groot Koerkamp, Frank Holstege, Bernard van Oost, Pierre de Graan
Magazine: Genes, brain, and behavior
Titel: Adaptable gene-specific dye bias correction for two-channel DNA microarrays.
Auteur: Thanasis Margaritis, Philip Lijnzaad, Dik van Leenen, Diane Bouwmeester, Patrick Kemmeren, Sander R. van Hooff and Frank C.P. Holstege
Magazine: Molecular Systems Biology
Titel: Global transcriptional responses of fission and budding yeast to changes in copper and iron levels: a comparative study
Auteur: Rustici G, van Bakel H, Lackner DH, Holstege F, Wijmenga C, Bahler J, Brazma A
Magazine: Genome Biology
Titel: Type I interferon receptor-independent and -dependent host transcriptional responses to mouse hepatitis coronavirus infection in vivo.
Auteur: Raaben M, Groot Koerkamp MJ, Rottier PJ, de Haan CA
Magazine: BMC Genomics
Titel: E2F7 represses a transcriptional network of oscillating cell cycle genes to control S-phase progression
Auteur: Westendorp B, Mokry M, Groot Koerkamp M, Holstege F, Cuppen E, Bruin A de
Magazine: Nucleic Acids Research

Onderwerpen

Kenmerken

Projectnummer:
91106009
Looptijd: 0%
2006
2006
Gerelateerde programma's:
  • Investeringen Groot en Middelgroot
Gerelateerde subsidieronde:
Investeringen Middelgroot 2005
Projectleider en penvoerder:
Prof. dr. F.C.P. Holstege
Verantwoordelijke organisatie:
Universitair Medisch Centrum Utrecht